All articles

Skin Microbiome: Cultivating Rigor to Objectify Innovation

Published on 27/04/26 in the following categories Microbiota

The skin microbiome is not mere scenery. It is a functional component of the skin, involved in protection against pathogens, immune dialogue, and the modulation of inflammation. It is a dynamic ecosystem shaped by subtle interactions between bacteria, yeasts, the host, and the environment.

Our approach is grounded in a simple conviction: understanding a microbiome is not merely about identifying it. It is about knowing how to culture it, interrogate it, and generate scientifically defensible data.

This is precisely how we approach the skin microbiome: as a complex ecosystem whose actors, dynamics, and mechanisms must be mastered before attempting to modulate its balance.

Cutaneous Dysbiosis: Moving Beyond Mere Presence

In acne, atopic dermatitis, or seborrheic dermatitis, the key question is rarely “who is present?” but rather “what has shifted in the local balance?”

Dysbiosis rarely reflects simple presence or absence. It typically results from subtle imbalances between species, strains, or phylotypes, influenced by the cutaneous context: sebum, pH, moisture, barrier integrity, and environmental exposure.

Thinking as microbiologists therefore means targeting the relevant microorganisms, selecting the appropriate level of complexity, and defining readouts consistent with the underlying hypothesis.

A sound study always begins with a sound question. But appropriate models are essential to answer it.

Cultivating the Invisible: Making the Microbiome Testable

Working on the skin microbiome relies on a core expertise: knowing how to culture the right strains under the right conditions. Without this, results may lack representativeness or reproducibility.

Take Malassezia restricta, a lipophilic yeast of the scalp implicated in seborrheic dermatitis: specific lipid requirements, slow growth, controlled atmospheric conditions. What may appear “standard” in a protocol can become a genuine experimental challenge.

The same applies to Cutibacterium acnes: its seven phylotypes do not have the same impact in acne. Incorporating phylogenetic distinctions significantly strengthens the scientific relevance of both testing and interpretation.

Depending on the indication, we also integrate other key species such as Staphylococcus aureus, involved in atopic dermatitis, or Candida albicans, studied either individually or in interaction models when this provides additional ecological relevance.

From Screening to Mechanistic Studies: Structuring the Evidence

Objectives vary: to explore, compare, understand, or consolidate evidence. The challenge is to answer meaningful questions regarding selectivity, robustness, context, and mechanism.

We support our partners from strain-panel screening to readouts capable of distinguishing static effects (bacteriostatic/fungistatic) from cidal effects (bactericidal/fungicidal), and of linking a phenotype to a defensible mechanistic hypothesis (membrane targeting, biosynthesis pathways, metabolism, functional signatures).

After screening or an initial mechanistic readout comes the decisive step: transforming an experimental signal into actionable evidence. Moving from “it works” to “it works in which context, against which microorganisms, with what level of selectivity, and why.”

For example, in Malassezia, certain compounds combine an “ergosterol signature” with metabolic impact, suggesting a potentially hybrid mechanism of action. In Cutibacterium acnes, reasoning at the phylotype level allows evaluation of both efficacy and selectivity considering profiles associated with inflammation or skin homeostasis.

This structured approach not only objectifies an observed effect but also strengthens the scientific dossier and anticipates the credibility of microbiome-related claims.

From the Laboratory to the Volunteer: Connecting Mechanisms to Reality

Once in vitro models are consolidated, the next step is to verify whether observations hold true within the reality of a living, variable, and context-dependent microbiome.

Smaltis can rely on studies including healthy volunteers and skin sampling to contextualize findings, stratify microbiome profiles, and measure impact in a more ecological manner through relevant microbiological markers.

Supporting Innovation with Scientific Rigor

The skin microbiome field is expanding rapidly, while simultaneously undergoing scientific and regulatory structuring.

In this context, microbiological rigor becomes a differentiating factor:
asking the right question, choosing the right model, mastering demanding cultures, linking effects to mechanisms, and confronting results with the real ecosystem.

At Smaltis, we transform microbiological hypotheses into solid, actionable, and credible data.

Because before speaking about microbiomes, one must first speak the language of microbiology!

News and articles

Skin Microbiome: Cultivating Rigor to Objectify Innovation

The skin microbiome is not mere scenery. It is a functional component of the skin, involved in protection against pathogens, immune dialogue, and the modulation of inflammation. It is a dynamic ecosystem shaped by subtle interactions between bacteria, yeasts, the host, and the environment.

Our approach is grounded in a simple conviction: understanding a microbiome is not merely about identifying it. It is about knowing how to culture it, interrogate it, and generate scientifically defensible data.

This is precisely how we approach the skin microbiome: as a complex ecosystem whose actors, dynamics, and mechanisms must be mastered before attempting to modulate its balance.

READ THE POST

The Story of a Microbiota That Became a Medicine

Once upon a time, in the hospitals of the twenty-first century, there was an infection that even antibiotics could no longer silence. An opportunistic infection caused by a bacterium called Clostridioides difficile, it often appeared in patients who were already vulnerable… and, above all, already heavily treated. Let us look back at the history of this infection, which gave rise to new therapeutic approaches.

READ THE POST

Probiotic Characterization: Demonstrating Safety and Substantiating Activity

Probiotics are often presented as a simple category. In reality, their characterization has become a demanding scientific and regulatory exercise. It is no longer enough to identify a species or to invoke a favorable history of use: the demonstration must now be conducted at the strain level, in a way that is consistent with the intended use, the target population, and the applicable regulatory framework. In the main reference frameworks, a microorganism can be qualified as a probiotic in the strict sense only if it is sufficiently characterized, safe for its intended use, alive at a relevant dose until the end of the product’s shelf life, and associated with a documented health benefit. [1,5,7,8]

The key question therefore becomes: what can we robustly demonstrate about its identity, safety, and functional activity? This is particularly true for new or poorly documented strains, for which taxonomy alone is not sufficient. The EFSA, GRAS, and Canadian frameworks converge on one central point: useful characterization is strain-level characterization interpreted in light of the final use. [1-6]

READ THE POST

Designing Bacterial Mutants: From Gene Editing to Robust Strain Engineering

The construction of bacterial mutants is a cornerstone of microbiology. Historically used to decipher gene function, it now plays an equally strategic role in bioproduction, biotechnology, and the development of therapeutic bacteria, where the engineered strain itself may ultimately become the final product.

This shift has profoundly changed how mutagenesis projects are approached. Today, the objective is no longer simply to modify a gene, but to design a strain aligned with its final application, operational constraints, and regulatory expectations.

READ THE POST

Lugdunin: the secret weapon of an indomitable bacterium

Once upon a time, an invisible battle was raging deep inside our noses. A microscopic battlefield, where bacteria fought relentlessly to defend their territory. Picture a small village of indomitable Gauls, surrounded on all sides… but instead of Romans, it’s microbes. And in this surprisingly strategic setting, a most unexpected antibiotic was discovered: lugdunin.

READ THE POST

2026: Taking on New Scientific Challenges Together

As we step into 2026, the entire Smaltis team sends you our warmest wishes. May this new year bring clarity, creativity, meaningful collaborations — and a few scientific breakthroughs that get the attention they deserve.

READ THE POST

Antimicrobial activity testing: measuring, understanding, and anticipating resistance

Every day, antimicrobials face their natural adversaries: bacteria.
But in this silent war, nothing remains static — bacteria learn, adapt, defend themselves… and develop increasingly sophisticated resistance mechanisms.
Smaltis is a microbiology CRO specialized in the study of antimicrobial resistance and the preclinical development of antimicrobials.
We support the developers of new antibiotics, peptides, biocides, and other anti-infective agents with a comprehensive panel of in vitro assays designed to meet the most demanding R&D challenges.

READ THE POST

Meeting the Innovation

Smaltis at the Key Industry Events of Autumn 2025! From medical devices to biotherapies, from fundamental research to industrial production, we meet project leaders to better understand microbiology needs and build new collaborations.

READ THE POST

New Offer Structure: 2 Business Units Supporting Your Projects

At Smaltis, our ambition remains unchanged: bringing microbiological excellence to your innovations.
To better address the diversity of your needs, we have structured our offer around 2 complementary Business Units, true pillars of our scientific and technical commitment.

READ THE POST

Malassezia: Cultivating the Invisible – A Challenge Met

Some yeasts are particularly resistant… especially Malassezia restricta.

This lipophilic yeast, naturally present on human skin, is involved in various imbalances of the skin microbiota, notably those linked to dandruff or seborrheic dermatitis. But cultivating it in the laboratory is no easy task!

READ THE POST

Let's study your project!

Are you interested in our services? Ask our experts to study your needs and design a tailor-made collaboration with you.

Book a discovery call